University of Göttingen
|
Faculty of Biology
|
Inst. of Microbiology and Genetics
|
Dep. of Bioinformatics
|
Spaced Words
The
Spaced Words
Submission Form
Step 1 : Sequences
A)
Enter a set of sequences in
FASTA format
- the program will recognize if the input sequences are DNA or protein sequences:
>Sequence1 ATGATGAGTAGT >Sequence2 AAATTGTGGTGTGTC >Sequence3 CGATCATCGTA
Or,
upload
a Fasta File to the server (files larger than 10MB or 500 sequences are not allowed):
B)
Enter a GenBank accession number to add GenBank sequences to an uploaded Fasta File or an entered set of sequences:
Accession numbers:
Step 2 : Patterns
Generate patterns
automatically
(un-check if you want to generate patterns manually)
Or, specify the
parameters
:
Weight:
select value
2
3
4
5
6
7
8
9
10
Number of don't care Positions:
select value
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
Number of Patterns:
select value
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
Alternatively, you can
manually
enter a set of patterns here:
10110001 10111 1001011 11011 11100001 110011 11101 10100101 101011 11000011
You could also
upload
a textfile of patterns, separated by newline:
Step 3 : Distance measurement
DNA
Protein
Step 4 : Submit your Job
Back to
Spaced-Words homepage